3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01259

Details:

PFam ID : PF01259

PFam Domain Description : SAICAR synthetase

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 1273

Average sequence length: 243.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01259	Q1YRI3_9GAMM_1_54	71.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01259	B2L3L7_9BILA_180_291	100

Sequence based PCA Plot of the family - PF01259 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=64 Length=17
Motif2 Start=109 Length=8
Motif3 Start=4 Length=11
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay