3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04963

Details:

PFam ID : PF04963

PFam Domain Description : Sigma-54 factor, core binding domain

Number of Sequence in 50% Dataset : 242

Number of Sequence in Full Dataset : 799

Average sequence length: 192.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04963	E1NUB4_9LACO_2_95	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04963	C9RQK6_FIBSS_136_367	100

Sequence based PCA Plot of the family - PF04963 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=218 Length=14
Motif2 Start=112 Length=8
Motif3 Start=180 Length=8
Motif4 Start=198 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay