3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13867

Details:

PFam ID : PF13867

PFam Domain Description : Sin3 binding region of histone deacetylase complex subunit SAP30

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 119

Average sequence length: 50.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13867	Q011X5_OSTTA_141_195	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13867	Q011X5_OSTTA_141_195	100

Sequence based PCA Plot of the family - PF13867 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=18
Motif2 Start=15 Length=8
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay