3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02383

Details:

PFam ID : PF02383

PFam Domain Description : SacI homology domain

Number of Sequence in 50% Dataset : 230

Number of Sequence in Full Dataset : 639

Average sequence length: 305.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02383	D0NSZ0_PHYIT_237_313	89.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02383	C4Q3I5_SCHMA_48_355	100

Sequence based PCA Plot of the family - PF02383 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=70 Length=8
Motif3 Start=1 Length=8
Motif4 Start=174 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay