3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09388

Details:

PFam ID : PF09388

PFam Domain Description : Spo0E like sporulation regulatory protein

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 235

Average sequence length: 44.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09388	B0TF79_HELMI_5_52	5.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09388	B8FY13_DESHD_24_71	100

Sequence based PCA Plot of the family - PF09388 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay