3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00277

Details:

PFam ID : PF00277

PFam Domain Description : Serum amyloid A protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 62

Average sequence length: 95.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00277	F1NK84_CHICK_35_93	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00277	A6N9S3_ORNPR_40_138	100

Sequence based PCA Plot of the family - PF00277 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=32 Length=8
Motif4 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay