3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08132

Details:

PFam ID : PF08132

PFam Domain Description : S-adenosyl-l-methionine decarboxylase leader peptide

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 17

Average sequence length: 47.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08132	E0G5P3_ENTFA_1_33	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08132	D8S1M2_SELML_3_48	100

Sequence based PCA Plot of the family - PF08132 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay