3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05843

Details:

PFam ID : PF05843

PFam Domain Description : Suppressor of forked protein (Suf)

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 296

Average sequence length: 206.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05843	CLF1_CANGA_583_675	86.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05843	C9SG27_VERA1_635_725	99.6

Sequence based PCA Plot of the family - PF05843 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=55 Length=8
Motif3 Start=108 Length=8
Motif4 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay