3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03583

Details:

PFam ID : PF03583

PFam Domain Description : Secretory lipase

Number of Sequence in 50% Dataset : 152

Number of Sequence in Full Dataset : 419

Average sequence length: 255.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03583	TRM2_HHV6U_26_99	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03583	D0LAI5_GORB4_163_349	100

Sequence based PCA Plot of the family - PF03583 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=106 Length=8
Motif3 Start=137 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay