3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02650

Details:

PFam ID : PF02650

PFam Domain Description : Sporulation Regulator WhiA C terminal domain

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 411

Average sequence length: 184.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02650	C5NVH2_9BACL_114_227	62.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02650	C5J7D1_MYCCR_80_277	100

Sequence based PCA Plot of the family - PF02650 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=102 Length=11
Motif3 Start=163 Length=11
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay