3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02889

Details:

PFam ID : PF02889

PFam Domain Description : Sec63 Brl domain

Number of Sequence in 50% Dataset : 244

Number of Sequence in Full Dataset : 820

Average sequence length: 300.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02889	B0XLT6_CULQU_1_68	64.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02889	Q9AVX9_GUITH_598_851	100

Sequence based PCA Plot of the family - PF02889 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=181 Length=8
Motif2 Start=30 Length=8
Motif3 Start=97 Length=8
Motif4 Start=343 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay