3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03931

Details:

PFam ID : PF03931

PFam Domain Description : Skp1 family, tetramerisation domain

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 468

Average sequence length: 62.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03931	Q9U2N1_CAEEL_1_25	65.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03931	B5Y5I2_PHATC_4_75	100

Sequence based PCA Plot of the family - PF03931 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=45 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay