3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04130

Details:

PFam ID : PF04130

PFam Domain Description : Spc97 / Spc98 family

Number of Sequence in 50% Dataset : 451

Number of Sequence in Full Dataset : 787

Average sequence length: 519.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04130	Q5TJF2_CANFA_1_68	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04130	B8PPG8_POSPM_22_226	99.2

Sequence based PCA Plot of the family - PF04130 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=595 Length=8
Motif3 Start=471 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay