3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04270

Details:

PFam ID : PF04270

PFam Domain Description : Streptococcal histidine triad protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 132

Average sequence length: 48.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04270	C4L9W2_TOLAT_1_105	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04270	D9NV65_STRPN_3_39	96.1

Sequence based PCA Plot of the family - PF04270 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=8
Motif2 Start=4 Length=8
Motif3 Start=25 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay