3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10156

Details:

PFam ID : PF10156

PFam Domain Description : Subunit 17 of Mediator complex

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 121

Average sequence length: 382.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10156	B3RJU6_TRIAD_3_197	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10156	MED17_KLULA_1_569	99.1

Sequence based PCA Plot of the family - PF10156 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay