3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01657

Details:

PFam ID : PF01657

PFam Domain Description : Salt stress response/antifungal

Number of Sequence in 50% Dataset : 168

Number of Sequence in Full Dataset : 1092

Average sequence length: 100.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01657	A5BW08_VITVI_469_519	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01657	CRK17_ARATH_141_256	100

Sequence based PCA Plot of the family - PF01657 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=39 Length=11
Motif4 Start=84 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay