3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03616

Details:

PFam ID : PF03616

PFam Domain Description : Sodium/glutamate symporter

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 407

Average sequence length: 341.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03616	A8NM27_COPC7_167_303	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03616	C9KIQ3_9FIRM_6_388	100

Sequence based PCA Plot of the family - PF03616 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=305 Length=8
Motif2 Start=357 Length=11
Motif3 Start=136 Length=8
Motif4 Start=28 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay