3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11035

Details:

PFam ID : PF11035

PFam Domain Description : Small nuclear RNA activating complex subunit 2-like

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 15

Average sequence length: 208.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11035	A6ML41_CALJA_1_94	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11035	Q5PQ00_XENLA_1_304	100

Sequence based PCA Plot of the family - PF11035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay