3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05652

Details:

PFam ID : PF05652

PFam Domain Description : Scavenger mRNA decapping enzyme (DcpS) N-terminal

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 112

Average sequence length: 105.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05652	Q5DGH0_SCHJA_42_172	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05652	E6ZXN0_9BASI_7_150	100

Sequence based PCA Plot of the family - PF05652 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=102 Length=8
Motif3 Start=130 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay