3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04433 Details: PFam ID : PF04433 PFam Domain Description : SWIRM domain Number of Sequence in 50% Dataset : 43 Number of Sequence in Full Dataset : 383 Average sequence length: 85.9 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04433B9FEG5_ORYSJ_241_335No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04433A2FSB7_TRIVA_364_43799.4 Sequence based PCA Plot of the family - PF04433 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=30 Length=8Motif2 Start=69 Length=11Motif3 Start=3 Length=18 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF04433
PFam Domain Description : SWIRM domain
Number of Sequence in 50% Dataset : 43
Number of Sequence in Full Dataset : 383
Average sequence length: 85.9
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER