3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03729

Details:

PFam ID : PF03729

PFam Domain Description : Short repeat of unknown function (DUF308)

Number of Sequence in 50% Dataset : 659

Number of Sequence in Full Dataset : 1698

Average sequence length: 64.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03729	E0K6I8_RHIME_114_166	26.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03729	Q0RBV6_FRAAA_53_136	92.7

Sequence based PCA Plot of the family - PF03729 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay