3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08250

Details:

PFam ID : PF08250

PFam Domain Description : Sperm-activating peptides

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 14

Average sequence length: 9.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08250	Q7LZ51_PHYBI_2_13	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08250	Q7M4C5_ECHMA_1_10	100

Sequence based PCA Plot of the family - PF08250 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay