3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08232

Details:

PFam ID : PF08232

PFam Domain Description : Striatin family

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 114

Average sequence length: 126.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08232	C5E4J7_ZYGRC_12_237	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08232	E9C2G5_9EUKA_25_171	100

Sequence based PCA Plot of the family - PF08232 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=23 Length=8
Motif3 Start=6 Length=8
Motif4 Start=145 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay