3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08514

Details:

PFam ID : PF08514

PFam Domain Description : STAG domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 140

Average sequence length: 114.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08514	B4IXI6_DROGR_48_132	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08514	C1MKZ1_MICPC_104_237	100

Sequence based PCA Plot of the family - PF08514 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay