3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08769

Details:

PFam ID : PF08769

PFam Domain Description : Sporulation initiation factor Spo0A C terminal

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 163

Average sequence length: 102.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08769	A4J7S8_DESRM_58_122	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08769	B6FZ48_9CLOT_38_144	100

Sequence based PCA Plot of the family - PF08769 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=31
Motif2 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay