3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13792

Details:

PFam ID : PF13792

PFam Domain Description : Sulfate transporter N-terminal domain with GLY motif

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 1983

Average sequence length: 80.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13792	A0AEU1_LISW6_183_340	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13792	B6AHR3_CRYMR_75_159	100

Sequence based PCA Plot of the family - PF13792 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=47 Length=8
Motif3 Start=58 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay