3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04539

Details:

PFam ID : PF04539

PFam Domain Description : Sigma-70 region 3

Number of Sequence in 50% Dataset : 364

Number of Sequence in Full Dataset : 2283

Average sequence length: 75.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04539	C0A3K0_9BACT_88_135	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04539	B8C8Z6_THAPS_169_258	100

Sequence based PCA Plot of the family - PF04539 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=74 Length=8
Motif2 Start=47 Length=8
Motif3 Start=1 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay