3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01740

Details:

PFam ID : PF01740

PFam Domain Description : STAS domain

Number of Sequence in 50% Dataset : 977

Number of Sequence in Full Dataset : 3849

Average sequence length: 109.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01740	A9V862_MONBE_775_1004	83.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01740	A0YCS1_9GAMM_42_115	99.9

Sequence based PCA Plot of the family - PF01740 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=206 Length=8
Motif2 Start=142 Length=8
Motif3 Start=172 Length=8
Motif4 Start=128 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay