3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12701

Details:

PFam ID : PF12701

PFam Domain Description : Scd6-like Sm domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 170

Average sequence length: 94.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12701	Q5BX75_SCHJA_11_113	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12701	F2UJH5_9EUKA_1_100	100

Sequence based PCA Plot of the family - PF12701 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=39 Length=8
Motif3 Start=16 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay