3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06369

Details:

PFam ID : PF06369

PFam Domain Description : Sea anemone cytotoxic protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 25

Average sequence length: 147.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06369	Q2KKQ2_SINCH_5_81	44.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06369	A9T119_PHYPA_1_177	100

Sequence based PCA Plot of the family - PF06369 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=104 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay