3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08764

Details:

PFam ID : PF08764

PFam Domain Description : Staphylococcus aureus coagulase

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 43

Average sequence length: 235.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08764	A1X596_9VIRU_36_176	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08764	Q2UXM0_STRAG_40_309	97.6

Sequence based PCA Plot of the family - PF08764 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay