3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01805

Details:

PFam ID : PF01805

PFam Domain Description : Surp module

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 496

Average sequence length: 53.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01805	Q2IGF0_ANADE_47_941	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01805	A2G4N8_TRIVA_109_162	100

Sequence based PCA Plot of the family - PF01805 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=23
Motif2 Start=40 Length=8
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay