3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00082

Details:

PFam ID : PF00082

PFam Domain Description : Subtilase family

Number of Sequence in 50% Dataset : 1940

Number of Sequence in Full Dataset : 6979

Average sequence length: 295.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00082	B4EF67_BURCJ_26_599	93.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00082	B4EF67_BURCJ_26_599	99.7

Sequence based PCA Plot of the family - PF00082 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=299 Length=8
Motif2 Start=309 Length=8
Motif3 Start=467 Length=8
Motif4 Start=263 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay