3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02198

Details:

PFam ID : PF02198

PFam Domain Description : Sterile alpha motif (SAM)/Pointed domain

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 204

Average sequence length: 81.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02198	C3Y5J1_BRAFL_118_202	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02198	C3Y5J1_BRAFL_118_202	100

Sequence based PCA Plot of the family - PF02198 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=66 Length=8
Motif2 Start=46 Length=11
Motif3 Start=24 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay