3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06558

Details:

PFam ID : PF06558

PFam Domain Description : Secretion monitor precursor protein (SecM)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 50

Average sequence length: 144.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06558	SECM_PROMH_23_175	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06558	SECM_PROMH_23_175	100

Sequence based PCA Plot of the family - PF06558 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=8
Motif2 Start=58 Length=17
Motif3 Start=142 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay