3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04203

Details:

PFam ID : PF04203

PFam Domain Description : Sortase family

Number of Sequence in 50% Dataset : 347

Number of Sequence in Full Dataset : 1467

Average sequence length: 137.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04203	A1YSD5_STRSU_1_62	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04203	D3MPG8_9FIRM_102_177	100

Sequence based PCA Plot of the family - PF04203 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=21 Length=8
Motif3 Start=62 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay