3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00436

Details:

PFam ID : PF00436

PFam Domain Description : Single-strand binding protein family

Number of Sequence in 50% Dataset : 396

Number of Sequence in Full Dataset : 2384

Average sequence length: 101.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00436	F2MF41_LACCA_4_101	66.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00436	A5D5Z3_PELTS_2_47	99.9

Sequence based PCA Plot of the family - PF00436 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=42 Length=11
Motif3 Start=16 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay