3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10638

Details:

PFam ID : PF10638

PFam Domain Description : Spindle body associated protein C-terminus

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 8

Average sequence length: 94.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10638	Q6FVT4_CANGA_757_857	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10638	Q75F87_ASHGO_836_946	100

Sequence based PCA Plot of the family - PF10638 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay