3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03315

Details:

PFam ID : PF03315

PFam Domain Description : Serine dehydratase beta chain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 1020

Average sequence length: 133.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03315	E7GDL5_9FIRM_64_119	74.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03315	A9KQY9_CLOPH_66_118	100

Sequence based PCA Plot of the family - PF03315 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=8
Motif2 Start=150 Length=8
Motif3 Start=1 Length=23
Motif4 Start=170 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay