3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08491

Details:

PFam ID : PF08491

PFam Domain Description : Squalene epoxidase

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 165

Average sequence length: 230.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08491	A2BWF5_PROM5_237_371	56.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08491	E3K8K2_PUCGT_206_509	100

Sequence based PCA Plot of the family - PF08491 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=84 Length=8
Motif2 Start=45 Length=8
Motif3 Start=96 Length=11
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay