3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02265

Details:

PFam ID : PF02265

PFam Domain Description : S1/P1 Nuclease

Number of Sequence in 50% Dataset : 163

Number of Sequence in Full Dataset : 370

Average sequence length: 238.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02265	C2G3H0_9SPHI_23_98	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02265	B5YKD8_THEYD_27_252	100

Sequence based PCA Plot of the family - PF02265 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=72 Length=8
Motif2 Start=43 Length=8
Motif3 Start=2 Length=8
Motif4 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay