| No. |
Link to 3pfdb+ |
Pfam Description |
| 1 |
PF02527
|
rRNA small subunit methyltransferase G |
| 2 |
PF04085
|
rod shape-determining protein MreC |
| 3 |
PF04093
|
rod shape-determining protein MreD |
| 4 |
PF00154
|
recA bacterial DNA recombination protein |
| 5 |
PF00545
|
ribonuclease |
| 6 |
PF00673
|
ribosomal L5P family C-terminus |
| 7 |
PF08167
|
rRNA processing/ribosome biogenesis |
| 8 |
PF13234
|
rRNA-processing arch domain |
| 9 |
PF08524
|
rRNA processing |
| 10 |
PF14408
|
Ribosomally synthesized peptide in actinomycetes |
| 11 |
PF01094
|
Receptor family ligand binding region |
| 12 |
PF12120
|
Rifampin ADP-ribosyl transferase |
| 13 |
PF11599
|
RRNA methyltransferase AviRa |
| 14 |
PF11473
|
RNA binding protein B2 |
| 15 |
PF14406
|
Ribosomally synthesized peptide in Bacteroidetes |
| 16 |
PF02923
|
Restriction endonuclease BamHI |
| 17 |
PF13229
|
Right handed beta helix region |
| 18 |
PF10403
|
Rad4 beta-hairpin domain 1 |
| 19 |
PF10404
|
Rad4 beta-hairpin domain 2 |
| 20 |
PF10405
|
Rad4 beta-hairpin domain 3 |
| 21 |
PF11564
|
Restriction endonuclease BpuJI - N terminal |
| 22 |
PF10174
|
RIM-binding protein of the cytomatrix active zone |
| 23 |
PF05179
|
RNA pol II accessory factor, Cdc73 family |
| 24 |
PF00637
|
Region in Clathrin and VPS |
| 25 |
PF12032
|
Regulatory CLIP domain of proteinases |
| 26 |
PF05785
|
Rho-activating domain of cytotoxic necrotizing factor |
| 27 |
PF01257
|
Respiratory-chain NADH dehydrogenase 24 Kd subunit |
| 28 |
PF00329
|
Respiratory-chain NADH dehydrogenase, 30 Kd subunit |
| 29 |
PF00346
|
Respiratory-chain NADH dehydrogenase, 49 Kd subunit |
| 30 |
PF01512
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit |
| 31 |
PF04818
|
RNA polymerase II-binding domain. |
| 32 |
PF07592
|
Rhodopirellula transposase DDE domain |
| 33 |
PF13486
|
Reductive dehalogenase subunit |
| 34 |
PF06442
|
R67 dihydrofolate reductase |
| 35 |
PF07261
|
Replication initiation and membrane attachment |
| 36 |
PF03330
|
Rare lipoprotein A (RlpA)-like double-psi beta-barrel |
| 37 |
PF11989
|
Retrograde transport protein Dsl1 C terminal |
| 38 |
PF11988
|
Retrograde transport protein Dsl1 N terminal |
| 39 |
PF06435
|
Repeat of unknown function (DUF1079) |
| 40 |
PF06513
|
Repeat of unknown function (DUF1103) |
| 41 |
PF06565
|
Repeat of unknown function (DUF1126) |
| 42 |
PF06582
|
Repeat of unknown function (DUF1136) |
| 43 |
PF06671
|
Repeat of unknown function (DUF1174) |
| 44 |
PF06758
|
Repeat of unknown function (DUF1220) |
| 45 |
PF07142
|
Repeat of unknown function (DUF1388) |
| 46 |
PF07397
|
Repeat of unknown function (DUF1502) |
| 47 |
PF09895
|
RecB-family nuclease (DUF2122) |
| 48 |
PF10329
|
Region of unknown function (DUF2417) |
| 49 |
PF03984
|
Repeat of unknown function (DUF346) |
| 50 |
PF03988
|
Repeat of Unknown Function (DUF347) |
| 51 |
PF12172
|
Rubredoxin-like zinc ribbon domain (DUF35_N) |
| 52 |
PF12398
|
Receptor serine/threonine kinase |
| 53 |
PF12408
|
Ribose-5-phosphate isomerase |
| 54 |
PF12426
|
RNA dependent RNA polymerase |
| 55 |
PF09816
|
RNA polymerase II transcription elongation factor |
| 56 |
PF02963
|
Restriction endonuclease EcoRI |
| 57 |
PF09217
|
Restriction endonuclease EcoRII, N-terminal |
| 58 |
PF11129
|
Rev protein of equine infectious anaemia virus |
| 59 |
PF10390
|
RNA polymerase II elongation factor ELL |
| 60 |
PF06881
|
RNA polymerase II transcription factor SIII (Elongin) subunit A |
| 61 |
PF09195
|
Restriction endonuclease BglII |
| 62 |
PF09194
|
Restriction endonuclease BsobI |
| 63 |
PF09233
|
Restriction endonuclease EcoRV |
| 64 |
PF09254
|
Restriction endonuclease FokI, C terminal |
| 65 |
PF09226
|
Restriction endonuclease HincII |
| 66 |
PF09208
|
Restriction endonuclease MspI |
| 67 |
PF09225
|
Restriction endonuclease PvuII |
| 68 |
PF02945
|
Recombination endonuclease VII |
| 69 |
PF03646
|
Repressor of phase-1 flagellin |
| 70 |
PF07972
|
Riboflavin kinase |
| 71 |
PF02662
|
Recombinase Flp protein |
| 72 |
PF04964
|
Recombinase Flp protein N-terminus |
| 73 |
PF10344
|
RNA pol II promoter Fmp27 protein domain |
| 74 |
PF10347
|
RNA pol II promoter Fmp27 protein domain |
| 75 |
PF10305
|
RNA pol II promoter Fmp27 protein domain |
| 76 |
PF10359
|
Ribosomal RNA methyltransferase (FmrO) |
| 77 |
PF02980
|
Restriction endonuclease FokI, catalytic domain |
| 78 |
PF02981
|
Restriction endonuclease FokI, recognition domain |
| 79 |
PF01770
|
Reduced folate carrier |
| 80 |
PF14407
|
Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. |
| 81 |
PF06901
|
RTX iron-regulated protein FrpC |
| 82 |
PF02337
|
Retroviral GAG p10 protein |
| 83 |
PF00517
|
Retroviral envelope protein |
| 84 |
PF10192
|
Rhodopsin-like GPCR transmembrane domain |
| 85 |
PF11639
|
REDY-like protein HapK |
| 86 |
PF12623
|
RNA repair, ligase-Pnkp-associating, region of Hen1 |
| 87 |
PF14409
|
Ribosomally synthesized peptide in Herpetosiphon |
| 88 |
PF13804
|
Retro-transcribing viruses envelope glycoprotein |
| 89 |
PF02794
|
RTX toxin acyltransferase family |
| 90 |
PF02218
|
Repeat in HS1/Cortactin |
| 91 |
PF08461
|
Ribonuclease R winged-helix domain |
| 92 |
PF08221
|
RNA polymerase III subunit RPC82 helix-turn-helix domain |
| 93 |
PF12333
|
Rix1 complex component involved in 60S ribosome maturation |
| 94 |
PF03398
|
Regulator of Vps4 activity in the MVB pathway |
| 95 |
PF02502
|
Ribose/Galactose Isomerase |
| 96 |
PF14354
|
Restriction alleviation protein Lar |
| 97 |
PF03353
|
Ras-mediated vulval-induction antagonist |
| 98 |
PF13774
|
Regulated-SNARE-like domain |
| 99 |
PF04728
|
Repeated sequence found in lipoprotein LPP |
| 100 |
PF07544
|
RNA polymerase II transcription mediator complex subunit 9 |
| 101 |
PF09445
|
RNA cap guanine-N2 methyltransferase |
| 102 |
PF04452
|
RNA methyltransferase |
| 103 |
PF04603
|
Ran-interacting Mog1 protein |
| 104 |
PF13003
|
Ribosomal protein L1 |
| 105 |
PF04471
|
Restriction endonuclease |
| 106 |
PF13156
|
Restriction endonuclease |
| 107 |
PF08914
|
Rap1 Myb domain |
| 108 |
PF10567
|
RNA-recognition motif |
| 109 |
PF08414
|
Respiratory burst NADPH oxidase |
| 110 |
PF09126
|
Restriction endonuclease NaeI |
| 111 |
PF09420
|
Ribosome biogenesis protein Nop16 |
| 112 |
PF12183
|
Restriction endonuclease NotI |
| 113 |
PF11707
|
Ribosome 60S biogenesis N-terminal |
| 114 |
PF09401
|
RNA synthesis protein NSP10 |
| 115 |
PF11633
|
Replicase polyprotein 1ab |
| 116 |
PF11073
|
Rift valley fever virus non structural protein (NSs) like |
| 117 |
PF10599
|
Retro-transposon transporting motif |
| 118 |
PF08206
|
Ribonuclease B OB domain |
| 119 |
PF10255
|
RNA polymerase I-associated factor PAF67 |
| 120 |
PF04868
|
Retinal cGMP phosphodiesterase, gamma subunit |
| 121 |
PF12382
|
Retrotransposon peptidase |
| 122 |
PF05407
|
Rubella virus endopeptidase |
| 123 |
PF01562
|
Reprolysin family propeptide |
| 124 |
PF06542
|
Regulator protein PHA-1 |
| 125 |
PF10743
|
Regulatory phage protein cox |
| 126 |
PF06992
|
Replication protein P |
| 127 |
PF11131
|
Rap-phr extracellular signalling |
| 128 |
PF01620
|
Ribonuclease (pollen allergen) |
| 129 |
PF06978
|
Ribonucleases P/MRP protein subunit POP1 |
| 130 |
PF03294
|
RNA polymerase-associated transcription specificity factor, Rap94 |
| 131 |
PF06325
|
Ribosomal protein L11 methyltransferase (PrmA) |
| 132 |
PF00849
|
RNA pseudouridylate synthase |
| 133 |
PF07704
|
Rv0623-like transcription factor |
| 134 |
PF01885
|
RNA 2'-phosphotransferase, Tpt1 / KptA family |
| 135 |
PF11463
|
R.HinP1I restriction endonuclease |
| 136 |
PF01424
|
R3H domain |
| 137 |
PF13902
|
R3H-associated N-terminal domain |
| 138 |
PF00788
|
Ras association (RalGDS/AF-6) domain |
| 139 |
PF13890
|
Rab3 GTPase-activating protein catalytic subunit |
| 140 |
PF09311
|
Rabaptin-like protein |
| 141 |
PF07019
|
Rab5-interacting protein (Rab5ip) |
| 142 |
PF03528
|
Rabaptin |
| 143 |
PF00566
|
Rab-GTPase-TBC domain |
| 144 |
PF07711
|
Rab geranylgeranyl transferase alpha-subunit, insert domain |
| 145 |
PF09632
|
Rac1-binding domain |
| 146 |
PF02144
|
Repair protein Rad1/Rec1/Rad17 |
| 147 |
PF03215
|
Rad17 cell cycle checkpoint protein |
| 148 |
PF08730
|
Rad33 |
| 149 |
PF03835
|
Rad4 transglutaminase-like domain |
| 150 |
PF04423
|
Rad50 zinc hook motif |
| 151 |
PF08423
|
Rad51 |
| 152 |
PF04098
|
Rad52/22 family double-strand break repair protein |
| 153 |
PF08658
|
Rad54 N terminal |
| 154 |
PF04139
|
Rad9 |
| 155 |
PF04002
|
RadC-like JAB domain |
| 156 |
PF04712
|
Radial spokehead-like protein |
| 157 |
PF06098
|
Radial spoke protein 3 |
| 158 |
PF04055
|
Radical SAM superfamily |
| 159 |
PF08497
|
Radical SAM N-terminal |
| 160 |
PF05691
|
Raffinose synthase or seed inhibition protein Sip1 |
| 161 |
PF12940
|
Recombination-activation protein 1 (RAG1) |
| 162 |
PF03089
|
Recombination activating protein 2 |
| 163 |
PF13341
|
RAG2 PHD domain |
| 164 |
PF08652
|
RAI1 like PD-(D/E)XK nuclease |
| 165 |
PF10257
|
Retinoic acid induced 16-like protein |
| 166 |
PF05498
|
Rapid ALkalinization Factor (RALF) |
| 167 |
PF04901
|
Receptor activity modifying family |
| 168 |
PF06624
|
Ribosome associated membrane protein RAMP4 |
| 169 |
PF03787
|
RAMP superfamily |
| 170 |
PF05508
|
RanGTP-binding protein |
| 171 |
PF07834
|
RanGAP1 C-terminal domain |
| 172 |
PF00638
|
RanBP1 domain |
| 173 |
PF08373
|
RAP domain |
| 174 |
PF03085
|
Rhoptry-associated protein 1 (RAP-1) |
| 175 |
PF07218
|
Rhoptry-associated protein 1 (RAP-1) |
| 176 |
PF09197
|
Rap1, DNA-binding |
| 177 |
PF11626
|
Rap1 - C terminal domain |
| 178 |
PF08771
|
Rapamycin binding domain |
| 179 |
PF12137
|
RNA polymerase recycling family C-terminal |
| 180 |
PF10579
|
Rapsyn N-terminal myristoylation and linker region |
| 181 |
PF02145
|
Rap/ran-GAP |
| 182 |
PF00071
|
Ras family |
| 183 |
PF03836
|
RasGAP C-terminus |
| 184 |
PF00617
|
RasGEF domain |
| 185 |
PF00618
|
RasGEF N-terminal motif |
| 186 |
PF12234
|
RAVE protein 1 C terminal |
| 187 |
PF10490
|
Rb-binding domain of kinetochore protein Cenp-F/LEK1 |
| 188 |
PF08169
|
RBB1NT (NUC162) domain |
| 189 |
PF12338
|
Ribulose-1,5-bisphosphate carboxylase small subunit |
| 190 |
PF02196
|
Raf-like Ras-binding domain |
| 191 |
PF06593
|
Raspberry bushy dwarf virus coat protein |
| 192 |
PF02033
|
Ribosome-binding factor A |
| 193 |
PF08081
|
RBM1CTR (NUC064) family |
| 194 |
PF05025
|
RbsD / FucU transport protein family |
| 195 |
PF11464
|
Rabenosyn Rab binding domain |
| 196 |
PF01858
|
Retinoblastoma-associated protein A domain |
| 197 |
PF01857
|
Retinoblastoma-associated protein B domain |
| 198 |
PF08934
|
Rb C-terminal domain |
| 199 |
PF02341
|
RbcX protein |
| 200 |
PF00415
|
Regulator of chromosome condensation (RCC1) repeat |
| 201 |
PF13540
|
Regulator of chromosome condensation (RCC1) repeat |
| 202 |
PF06405
|
Red chlorophyll catabolite reductase (RCC reductase) |
| 203 |
PF09456
|
RcsC Alpha-Beta-Loop (ABL) |
| 204 |
PF05177
|
RCSD region |
| 205 |
PF06271
|
RDD family |
| 206 |
PF11002
|
RFPL defining motif (RDM) |
| 207 |
PF05183
|
RNA dependent RNA polymerase |
| 208 |
PF00680
|
RNA dependent RNA polymerase |
| 209 |
PF00978
|
RNA dependent RNA polymerase |
| 210 |
PF07925
|
Reovirus RNA-dependent RNA polymerase lambda 3 |
| 211 |
PF09231
|
Rice dwarf virus p3 |
| 212 |
PF10262
|
Rdx family |
| 213 |
PF01030
|
Receptor L domain |
| 214 |
PF07508
|
Recombinase |
| 215 |
PF02565
|
Recombination protein O C terminal |
| 216 |
PF11967
|
Recombination protein O N terminal |
| 217 |
PF13114
|
RecO N terminal |
| 218 |
PF06959
|
RecQ helicase protein-like 5 (RecQ5) |
| 219 |
PF02132
|
RecR protein |
| 220 |
PF03837
|
RecT family |
| 221 |
PF03838
|
Recombination protein U |
| 222 |
PF02631
|
RecX family |
| 223 |
PF07964
|
Rec10 / Red1 |
| 224 |
PF08534
|
Redoxin |
| 225 |
PF07807
|
RED-like protein C-terminal region |
| 226 |
PF07808
|
RED-like protein N-terminal region |
| 227 |
PF02014
|
Reeler domain |
| 228 |
PF05755
|
Rubber elongation factor protein (REF) |
| 229 |
PF02010
|
REJ domain |
| 230 |
PF03432
|
Relaxase/Mobilisation nuclease domain |
| 231 |
PF04607
|
Region found in RelA / SpoT proteins |
| 232 |
PF04221
|
RelB antitoxin |
| 233 |
PF03763
|
Remorin, C-terminal region |
| 234 |
PF03766
|
Remorin, N-terminal region |
| 235 |
PF07850
|
Renin receptor-like protein |
| 236 |
PF08978
|
Reoviridae VP9 |
| 237 |
PF00979
|
Reovirus outer capsid protein, Sigma 3 |
| 238 |
PF06016
|
Reovirus core-spike protein lambda-2 (L2) |
| 239 |
PF05993
|
Reovirus major virion structural protein Mu-1/Mu-1C (M2) |
| 240 |
PF07781
|
Reovirus minor core protein Mu-2 |
| 241 |
PF06043
|
Reovirus P9-like family |
| 242 |
PF01664
|
Reovirus viral attachment protein sigma 1 |
| 243 |
PF04582
|
Reovirus sigma C capsid protein |
| 244 |
PF04057
|
Replication factor-A protein 1, N-terminal domain |
| 245 |
PF04536
|
Repair protein |
| 246 |
PF06970
|
Replication initiator protein A (RepA) N-terminus |
| 247 |
PF07506
|
RepB plasmid partitioning protein |
| 248 |
PF10723
|
Replication regulatory protein RepB |
| 249 |
PF06504
|
Replication protein C (RepC) |
| 250 |
PF03090
|
Replicase family |
| 251 |
PF13814
|
Replication-relaxation |
| 252 |
PF11423
|
Regulatory protein Mnt |
| 253 |
PF01421
|
Reprolysin (M12B) family zinc metalloprotease |
| 254 |
PF01446
|
Replication protein |
| 255 |
PF08661
|
Replication factor A protein 3 |
| 256 |
PF08646
|
Replication factor-A C terminal domain |
| 257 |
PF08542
|
Replication factor C C-terminal domain |
| 258 |
PF08724
|
Rep protein catalytic domain like |
| 259 |
PF02486
|
Replication initiation factor |
| 260 |
PF03248
|
Rer1 family |
| 261 |
PF08808
|
RES domain |
| 262 |
PF05140
|
ResB-like family |
| 263 |
PF06954
|
Resistin |
| 264 |
PF00239
|
Resolvase, N terminal domain |
| 265 |
PF00072
|
Response regulator receiver domain |
| 266 |
PF02453
|
Reticulon |
| 267 |
PF03732
|
Retrotransposon gag protein |
| 268 |
PF02813
|
Retroviral M domain |
| 269 |
PF10044
|
Retinal tissue protein |
| 270 |
PF00424
|
REV protein (anti-repression trans-activator protein) |
| 271 |
PF09522
|
R.Pab1 restriction endonuclease |
| 272 |
PF00472
|
RF-1 domain |
| 273 |
PF08519
|
Replication factor RFC1 C terminal domain |
| 274 |
PF10489
|
Ret finger protein-like 3 antisense |
| 275 |
PF04506
|
Rft protein |
| 276 |
PF04589
|
RFX1 transcription activation region |
| 277 |
PF02257
|
RFX DNA-binding domain |
| 278 |
PF06534
|
Repulsive guidance molecule (RGM) C-terminus |
| 279 |
PF06535
|
Repulsive guidance molecule (RGM) N-terminus |
| 280 |
PF03214
|
Reversibly glycosylated polypeptide |
| 281 |
PF08737
|
Rgp1 |
| 282 |
PF05045
|
Rhamnan synthesis protein F |
| 283 |
PF00615
|
Regulator of G protein signaling domain |
| 284 |
PF09128
|
Regulator of G protein signalling-like domain |
| 285 |
PF00974
|
Rhabdovirus spike glycoprotein |
| 286 |
PF03342
|
Rhabdovirus M1 matrix protein (M1 polymerase-associated protein) |
| 287 |
PF04785
|
Rhabdovirus matrix protein M2 |
| 288 |
PF03397
|
Rhabdovirus matrix protein |
| 289 |
PF00945
|
Rhabdovirus nucleocapsid protein |
| 290 |
PF03216
|
Rhabdovirus nucleoprotein |
| 291 |
PF02484
|
Rhabdovirus Non-virion protein |
| 292 |
PF06045
|
Rhamnogalacturonate lyase family |
| 293 |
PF00554
|
Rel homology domain (RHD) |
| 294 |
PF05879
|
Root hair defective 3 GTP-binding protein (RHD3) |
| 295 |
PF09284
|
Rhamnogalacturonase B, N-terminal |
| 296 |
PF01402
|
Ribbon-helix-helix protein, copG family |
| 297 |
PF12651
|
Ribbon-helix-helix domain |
| 298 |
PF13467
|
Ribbon-helix-helix domain |
| 299 |
PF12721
|
RIP homotypic interaction motif |
| 300 |
PF00581
|
Rhodanese-like domain |
| 301 |
PF00620
|
RhoGAP domain |
| 302 |
PF00621
|
RhoGEF domain |
| 303 |
PF01694
|
Rhomboid family |
| 304 |
PF12595
|
Rhomboid serine protease |
| 305 |
PF08912
|
Rho Binding |
| 306 |
PF02115
|
RHO protein GDP dissociation inhibitor |
| 307 |
PF07498
|
Rho termination factor, N-terminal domain |
| 308 |
PF07497
|
Rho termination factor, RNA-binding domain |
| 309 |
PF03527
|
RHS protein |
| 310 |
PF07999
|
Retrotransposon hot spot protein |
| 311 |
PF05593
|
RHS Repeat |
| 312 |
PF08428
|
Rib/alpha-like repeat |
| 313 |
PF05914
|
RIB43A |
| 314 |
PF01872
|
RibD C-terminal domain |
| 315 |
PF00636
|
Ribonuclease III domain |
| 316 |
PF00825
|
Ribonuclease P |
| 317 |
PF00445
|
Ribonuclease T2 family |
| 318 |
PF06479
|
Ribonuclease 2-5A |
| 319 |
PF08584
|
Ribonuclease P 40kDa (Rpp40) subunit |
| 320 |
PF02867
|
Ribonucleotide reductase, barrel domain |
| 321 |
PF00317
|
Ribonucleotide reductase, all-alpha domain |
| 322 |
PF00268
|
Ribonucleotide reductase, small chain |
| 323 |
PF04597
|
Ribophorin I |
| 324 |
PF00687
|
Ribosomal protein L1p/L10e family |
| 325 |
PF00466
|
Ribosomal protein L10 |
| 326 |
PF00298
|
Ribosomal protein L11, RNA binding domain |
| 327 |
PF03946
|
Ribosomal protein L11, N-terminal domain |
| 328 |
PF00542
|
Ribosomal protein L7/L12 C-terminal domain |
| 329 |
PF00572
|
Ribosomal protein L13 |
| 330 |
PF01294
|
Ribosomal protein L13e |
| 331 |
PF00238
|
Ribosomal protein L14p/L23e |
| 332 |
PF01929
|
Ribosomal protein L14 |
| 333 |
PF00827
|
Ribosomal L15 |
| 334 |
PF00252
|
Ribosomal protein L16p/L10e |
| 335 |
PF01196
|
Ribosomal protein L17 |
| 336 |
PF01775
|
Ribosomal L18ae/LX protein domain |
| 337 |
PF00828
|
Ribosomal protein L18e/L15 |
| 338 |
PF00861
|
Ribosomal L18p/L5e family |
| 339 |
PF14204
|
Ribosomal L18 C-terminal region |
| 340 |
PF01245
|
Ribosomal protein L19 |
| 341 |
PF01280
|
Ribosomal protein L19e |
| 342 |
PF00181
|
Ribosomal Proteins L2, RNA binding domain |
| 343 |
PF00453
|
Ribosomal protein L20 |
| 344 |
PF01157
|
Ribosomal protein L21e |
| 345 |
PF00829
|
Ribosomal prokaryotic L21 protein |
| 346 |
PF00237
|
Ribosomal protein L22p/L17e |
| 347 |
PF01776
|
Ribosomal L22e protein family |
| 348 |
PF00276
|
Ribosomal protein L23 |
| 349 |
PF03939
|
Ribosomal protein L23, N-terminal domain |
| 350 |
PF01246
|
Ribosomal protein L24e |
| 351 |
PF01386
|
Ribosomal L25p family |
| 352 |
PF01016
|
Ribosomal L27 protein |
| 353 |
PF01777
|
Ribosomal L27e protein family |
| 354 |
PF00830
|
Ribosomal L28 family |
| 355 |
PF01778
|
Ribosomal L28e protein family |
| 356 |
PF00831
|
Ribosomal L29 protein |
| 357 |
PF01779
|
Ribosomal L29e protein family |
| 358 |
PF03947
|
Ribosomal Proteins L2, C-terminal domain |
| 359 |
PF00297
|
Ribosomal protein L3 |
| 360 |
PF00327
|
Ribosomal protein L30p/L7e |
| 361 |
PF08079
|
Ribosomal L30 N-terminal domain |
| 362 |
PF01197
|
Ribosomal protein L31 |
| 363 |
PF01198
|
Ribosomal protein L31e |
| 364 |
PF01655
|
Ribosomal protein L32 |
| 365 |
PF01783
|
Ribosomal L32p protein family |
| 366 |
PF00471
|
Ribosomal protein L33 |
| 367 |
PF00468
|
Ribosomal protein L34 |
| 368 |
PF01199
|
Ribosomal protein L34e |
| 369 |
PF01247
|
Ribosomal protein L35Ae |
| 370 |
PF01632
|
Ribosomal protein L35 |
| 371 |
PF00444
|
Ribosomal protein L36 |
| 372 |
PF01158
|
Ribosomal protein L36e |
| 373 |
PF01780
|
Ribosomal L37ae protein family |
| 374 |
PF01907
|
Ribosomal protein L37e |
| 375 |
PF01781
|
Ribosomal L38e protein family |
| 376 |
PF00832
|
Ribosomal L39 protein |
| 377 |
PF00573
|
Ribosomal protein L4/L1 family |
| 378 |
PF01020
|
Ribosomal L40e family |
| 379 |
PF05162
|
Ribosomal protein L41 |
| 380 |
PF00935
|
Ribosomal protein L44 |
| 381 |
PF00281
|
Ribosomal protein L5 |
| 382 |
PF10501
|
Ribosomal subunit 39S |
| 383 |
PF00347
|
Ribosomal protein L6 |
| 384 |
PF01159
|
Ribosomal protein L6e |
| 385 |
PF03868
|
Ribosomal protein L6, N-terminal domain |
| 386 |
PF01248
|
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
| 387 |
PF03948
|
Ribosomal protein L9, C-terminal domain |
| 388 |
PF01281
|
Ribosomal protein L9, N-terminal domain |
| 389 |
PF00338
|
Ribosomal protein S10p/S20e |
| 390 |
PF00411
|
Ribosomal protein S11 |
| 391 |
PF00164
|
Ribosomal protein S12 |
| 392 |
PF00416
|
Ribosomal protein S13/S18 |
| 393 |
PF08069
|
Ribosomal S13/S15 N-terminal domain |
| 394 |
PF00253
|
Ribosomal protein S14p/S29e |
| 395 |
PF00312
|
Ribosomal protein S15 |
| 396 |
PF00886
|
Ribosomal protein S16 |
| 397 |
PF00366
|
Ribosomal protein S17 |
| 398 |
PF00833
|
Ribosomal S17 |
| 399 |
PF01084
|
Ribosomal protein S18 |
| 400 |
PF00203
|
Ribosomal protein S19 |
| 401 |
PF01090
|
Ribosomal protein S19e |
| 402 |
PF00318
|
Ribosomal protein S2 |
| 403 |
PF01649
|
Ribosomal protein S20 |
| 404 |
PF01165
|
Ribosomal protein S21 |
| 405 |
PF01249
|
Ribosomal protein S21e |
| 406 |
PF01282
|
Ribosomal protein S24e |
| 407 |
PF01283
|
Ribosomal protein S26e |
| 408 |
PF01599
|
Ribosomal protein S27a |
| 409 |
PF01667
|
Ribosomal protein S27 |
| 410 |
PF01200
|
Ribosomal protein S28e |
| 411 |
PF04758
|
Ribosomal protein S30 |
| 412 |
PF01015
|
Ribosomal S3Ae family |
| 413 |
PF00189
|
Ribosomal protein S3, C-terminal domain |
| 414 |
PF00163
|
Ribosomal protein S4/S9 N-terminal domain |
| 415 |
PF00900
|
Ribosomal family S4e |
| 416 |
PF11993
|
Ribosomal S4P (gammaproteobacterial) |
| 417 |
PF00333
|
Ribosomal protein S5, N-terminal domain |
| 418 |
PF03719
|
Ribosomal protein S5, C-terminal domain |
| 419 |
PF01250
|
Ribosomal protein S6 |
| 420 |
PF01092
|
Ribosomal protein S6e |
| 421 |
PF00177
|
Ribosomal protein S7p/S5e |
| 422 |
PF01251
|
Ribosomal protein S7e |
| 423 |
PF00410
|
Ribosomal protein S8 |
| 424 |
PF01201
|
Ribosomal protein S8e |
| 425 |
PF00380
|
Ribosomal protein S9/S16 |
| 426 |
PF00834
|
Ribulose-phosphate 3 epimerase family |
| 427 |
PF06026
|
Ribose 5-phosphate isomerase A (phosphoriboisomerase A) |
| 428 |
PF05104
|
Ribosome receptor lysine/proline rich region |
| 429 |
PF07064
|
RIC1 |
| 430 |
PF05062
|
RICH domain |
| 431 |
PF14200
|
Ricin-type beta-trefoil lectin domain-like |
| 432 |
PF00652
|
Ricin-type beta-trefoil lectin domain |
| 433 |
PF00355
|
Rieske [2Fe-2S] domain |
| 434 |
PF13806
|
Rieske-like [2Fe-2S] domain |
| 435 |
PF12231
|
Rap1-interacting factor 1 N terminal |
| 436 |
PF02009
|
Rifin/stevor family |
| 437 |
PF08454
|
RyR and IP3R Homology associated |
| 438 |
PF02197
|
Regulatory subunit of type II PKA R-subunit |
| 439 |
PF10522
|
RII binding domain |
| 440 |
PF11461
|
Rab interacting lysosomal protein |
| 441 |
PF08443
|
RimK-like ATP-grasp domain |
| 442 |
PF01782
|
RimM N-terminal domain |
| 443 |
PF12906
|
RING-variant domain |
| 444 |
PF00848
|
Ring hydroxylating alpha subunit (catalytic domain) |
| 445 |
PF00866
|
Ring hydroxylating beta subunit |
| 446 |
PF04437
|
RINT-1 / TIP-1 family |
| 447 |
PF01163
|
RIO1 family |
| 448 |
PF09202
|
Rio2, N-terminal |
| 449 |
PF00161
|
Ribosome inactivating protein |
| 450 |
PF14401
|
RimK-like ATPgrasp N-terminal domain |
| 451 |
PF13707
|
RloB-like protein |
| 452 |
PF04957
|
Ribosome modulation factor |
| 453 |
PF04321
|
RmlD substrate binding domain |
| 454 |
PF07521
|
RNA-metabolising metallo-beta-lactamase |
| 455 |
PF02646
|
RmuC family |
| 456 |
PF10443
|
RNA12 protein |
| 457 |
PF10150
|
Ribonuclease E/G family |
| 458 |
PF00075
|
RNase H |
| 459 |
PF08615
|
Ribonuclease H2 non-catalytic subunit (Ylr154p-like) |
| 460 |
PF01351
|
Ribonuclease HII |
| 461 |
PF13482
|
RNase_H superfamily |
| 462 |
PF01876
|
RNase P subunit p30 |
| 463 |
PF08228
|
RNase P subunit Pop3 |
| 464 |
PF01900
|
Rpp14/Pop5 family |
| 465 |
PF08675
|
RNA binding domain |
| 466 |
PF00910
|
RNA helicase |
| 467 |
PF09414
|
RNA ligase |
| 468 |
PF09511
|
RNA ligase |
| 469 |
PF01000
|
RNA polymerase Rpb3/RpoA insert domain |
| 470 |
PF04090
|
RNA polymerase I specific initiation factor |
| 471 |
PF01193
|
RNA polymerase Rpb3/Rpb11 dimerisation domain |
| 472 |
PF13656
|
RNA polymerase Rpb3/Rpb11 dimerisation domain |
| 473 |
PF02150
|
RNA polymerases M/15 Kd subunit |
| 474 |
PF01194
|
RNA polymerases N / 8 kDa subunit |
| 475 |
PF08292
|
RNA polymerase III subunit Rpc25 |
| 476 |
PF06883
|
RNA polymerase I, Rpa2 specific domain |
| 477 |
PF04997
|
RNA polymerase Rpb1, domain 1 |
| 478 |
PF00623
|
RNA polymerase Rpb1, domain 2 |
| 479 |
PF04983
|
RNA polymerase Rpb1, domain 3 |
| 480 |
PF05000
|
RNA polymerase Rpb1, domain 4 |
| 481 |
PF04998
|
RNA polymerase Rpb1, domain 5 |
| 482 |
PF04992
|
RNA polymerase Rpb1, domain 6 |
| 483 |
PF04990
|
RNA polymerase Rpb1, domain 7 |
| 484 |
PF05001
|
RNA polymerase Rpb1 C-terminal repeat |
| 485 |
PF04563
|
RNA polymerase beta subunit |
| 486 |
PF04561
|
RNA polymerase Rpb2, domain 2 |
| 487 |
PF04565
|
RNA polymerase Rpb2, domain 3 |
| 488 |
PF04566
|
RNA polymerase Rpb2, domain 4 |
| 489 |
PF10385
|
RNA polymerase beta subunit external 1 domain |
| 490 |
PF04567
|
RNA polymerase Rpb2, domain 5 |
| 491 |
PF00562
|
RNA polymerase Rpb2, domain 6 |
| 492 |
PF04560
|
RNA polymerase Rpb2, domain 7 |
| 493 |
PF03874
|
RNA polymerase Rpb4 |
| 494 |
PF01191
|
RNA polymerase Rpb5, C-terminal domain |
| 495 |
PF03871
|
RNA polymerase Rpb5, N-terminal domain |
| 496 |
PF01192
|
RNA polymerase Rpb6 |
| 497 |
PF03870
|
RNA polymerase Rpb8 |
| 498 |
PF05158
|
RNA polymerase Rpc34 subunit |
| 499 |
PF05132
|
RNA polymerase III RPC4 |
| 500 |
PF05645
|
RNA polymerase III subunit RPC82 |
| 501 |
PF12136
|
RNA polymerase Rpo13 subunit HTH domain |
| 502 |
PF03431
|
RNA replicase, beta-chain |
| 503 |
PF00773
|
RNB domain |
| 504 |
PF02508
|
Rnf-Nqr subunit, membrane protein |
| 505 |
PF13375
|
RnfC Barrel sandwich hybrid domain |
| 506 |
PF12647
|
RNHCP domain |
| 507 |
PF08591
|
Ribonucleotide reductase inhibitor |
| 508 |
PF08343
|
Ribonucleotide reductase N-terminal |
| 509 |
PF03259
|
Roadblock/LC7 domain |
| 510 |
PF10135
|
Rod binding protein |
| 511 |
PF10493
|
Rough deal protein C-terminal region |
| 512 |
PF10259
|
Rogdi leucine zipper containing protein |
| 513 |
PF00480
|
ROK family |
| 514 |
PF08067
|
ROKNT (NUC014) domain |
| 515 |
PF02027
|
RolB/RolC glucosidase family |
| 516 |
PF10247
|
Reactive mitochondrial oxygen species modulator 1 |
| 517 |
PF12334
|
Rickettsia outer membrane protein B |
| 518 |
PF06830
|
Root cap |
| 519 |
PF01815
|
Rop protein |
| 520 |
PF05082
|
Rop-like |
| 521 |
PF10727
|
Rossmann-like domain |
| 522 |
PF05443
|
ROS/MUCR transcriptional regulator protein |
| 523 |
PF12289
|
Rotavirus VP1 structural protein |
| 524 |
PF06929
|
Rotavirus VP3 protein |
| 525 |
PF05868
|
Rotavirus major outer capsid protein VP7 |
| 526 |
PF00980
|
Rotavirus major capsid protein VP6 |
| 527 |
PF01525
|
Rotavirus NS26 |
| 528 |
PF02509
|
Rotavirus non-structural protein 35 |
| 529 |
PF00981
|
Rotavirus RNA-binding Protein 53 (NS53) |
| 530 |
PF04866
|
Rotavirus non-structural protein 6 |
| 531 |
PF01665
|
Rotavirus non-structural protein NSP3 |
| 532 |
PF01452
|
Rotavirus non structural protein |
| 533 |
PF05087
|
Rotavirus VP2 protein |
| 534 |
PF08633
|
Rox3 mediator complex subunit |
| 535 |
PF03428
|
Replication protein C N-terminal domain |
| 536 |
PF11800
|
Replication protein C C-terminal region |
| 537 |
PF10134
|
Replication initiator protein A |
| 538 |
PF08620
|
RPAP1-like, C-terminal |
| 539 |
PF08621
|
RPAP1-like, N-terminal |
| 540 |
PF04181
|
Rtr1/RPAP2 family |
| 541 |
PF08784
|
Replication protein A C terminal |
| 542 |
PF03055
|
Retinal pigment epithelial membrane protein |
| 543 |
PF02755
|
RPEL repeat |
| 544 |
PF02318
|
Rabphilin-3A effector domain N-terminal |
| 545 |
PF12328
|
Rpp20 subunit of nuclear RNase MRP and P |
| 546 |
PF04032
|
RNAse P Rpr2/Rpp21/SNM1 subunit domain |
| 547 |
PF09382
|
RQC domain |
| 548 |
PF01765
|
Ribosome recycling factor |
| 549 |
PF12614
|
Ribosome recycling factor |
| 550 |
PF00076
|
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| 551 |
PF04059
|
RNA recognition motif 2 |
| 552 |
PF08777
|
RNA binding motif |
| 553 |
PF10598
|
RNA recognition motif of the spliceosomal PrP8 |
| 554 |
PF13893
|
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| 555 |
PF14259
|
RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) |
| 556 |
PF05327
|
RNA polymerase I specific transcription initiation factor RRN3 |
| 557 |
PF10214
|
RNA polymerase I-specific transcription-initiation factor |
| 558 |
PF11781
|
RNA polymerase I-specific transcription initiation factor Rrn7 |
| 559 |
PF10680
|
RNA polymerase I specific transcription initiation factor |
| 560 |
PF00398
|
Ribosomal RNA adenine dimethylase |
| 561 |
PF07890
|
Rrp15p |
| 562 |
PF12923
|
Ribosomal RNA-processing protein 7 (RRP7) |
| 563 |
PF04939
|
Ribosome biogenesis regulatory protein (RRS1) |
| 564 |
PF14239
|
RRXRR protein |
| 565 |
PF06459
|
Ryanodine Receptor TM 4-6 |
| 566 |
PF08071
|
RS4NT (NUC023) domain |
| 567 |
PF14361
|
RsbT co-antagonist protein rsbRD N-terminal domain |
| 568 |
PF08678
|
Rsbr N terminal |
| 569 |
PF08586
|
RSC complex, Rsc14/Ldb7 subunit |
| 570 |
PF07547
|
RSD-2 N-terminal domain |
| 571 |
PF04353
|
Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ |
| 572 |
PF08600
|
Rsm1-like |
| 573 |
PF12174
|
RCD1-SRO-TAF4 (RST) plant domain |
| 574 |
PF03113
|
Respiratory synctial virus non-structural protein NS2 |
| 575 |
PF04479
|
RTA1 like protein |
| 576 |
PF06361
|
Rice tungro bacilliform virus P12 protein |
| 577 |
PF06216
|
Rice tungro bacilliform virus P46 protein |
| 578 |
PF01137
|
RNA 3'-terminal phosphate cyclase |
| 579 |
PF06956
|
Regulator of RNA terminal phosphate cyclase |
| 580 |
PF05189
|
RNA 3'-terminal phosphate cyclase (RTC), insert domain |
| 581 |
PF09357
|
RteC protein |
| 582 |
PF04641
|
Replication termination factor 2 |
| 583 |
PF02334
|
Replication terminator protein |
| 584 |
PF07809
|
RTP801 C-terminal region |
| 585 |
PF09510
|
Rtt102p-like transcription regulator protein |
| 586 |
PF02382
|
RTX N-terminal domain |
| 587 |
PF07634
|
RtxA repeat |
| 588 |
PF08339
|
RTX C-terminal domain |
| 589 |
PF05750
|
Rubella capsid protein |
| 590 |
PF05748
|
Rubella membrane glycoprotein E1 |
| 591 |
PF05749
|
Rubella membrane glycoprotein E2 |
| 592 |
PF09273
|
Rubisco LSMT substrate-binding |
| 593 |
PF00016
|
Ribulose bisphosphate carboxylase large chain, catalytic domain |
| 594 |
PF02788
|
Ribulose bisphosphate carboxylase large chain, N-terminal domain |
| 595 |
PF00101
|
Ribulose bisphosphate carboxylase, small chain |
| 596 |
PF12601
|
Rubivirus non-structural protein |
| 597 |
PF00301
|
Rubredoxin |
| 598 |
PF02915
|
Rubrerythrin |
| 599 |
PF02759
|
RUN domain |
| 600 |
PF00853
|
Runt domain |
| 601 |
PF08504
|
Runx inhibition domain |
| 602 |
PF07499
|
RuvA, C-terminal domain |
| 603 |
PF01330
|
RuvA N terminal domain |
| 604 |
PF00077
|
Retroviral aspartyl protease |
| 605 |
PF08284
|
Retroviral aspartyl protease |
| 606 |
PF00078
|
Reverse transcriptase (RNA-dependent DNA polymerase) |
| 607 |
PF07727
|
Reverse transcriptase (RNA-dependent DNA polymerase) |
| 608 |
PF13456
|
Reverse transcriptase-like |
| 609 |
PF06815
|
Reverse transcriptase connection domain |
| 610 |
PF06817
|
Reverse transcriptase thumb domain |
| 611 |
PF05773
|
RWD domain |
| 612 |
PF02042
|
RWP-RK domain |
| 613 |
PF08595
|
RXT2-like, N-terminal |
| 614 |
PF01365
|
RIH domain |
| 615 |
PF02026
|
RyR domain |
| 616 |
PF05526
|
Rhodococcus equi virulence-associated protein |
| 617 |
PF11435
|
RNA binding protein She2p |
| 618 |
PF03084
|
Reoviral Sigma1/Sigma2 family |
| 619 |
PF11603
|
Regulatory protein Sir1 |
| 620 |
PF02463
|
RecF/RecN/SMC N terminal domain |
| 621 |
PF10428
|
RAM signalling pathway protein |
| 622 |
PF08032
|
RNA 2'-O ribose methyltransferase substrate binding |
| 623 |
PF14404
|
Ribosomally synthesized peptide in Streptomyces species |
| 624 |
PF11479
|
RNA silencing suppressor P21 |
| 625 |
PF07962
|
Replication Fork Protection Component Swi3 |
| 626 |
PF06047
|
Ras-induced vulval development antagonist |
| 627 |
PF09734
|
RNA polymerase III transcription factor (TF)IIIC subunit |
| 628 |
PF11717
|
RNA binding activity-knot of a chromodomain |
| 629 |
PF03658
|
RnfH family Ubiquitin |
| 630 |
PF02134
|
Repeat in ubiquitin-activating (UBA) protein |
| 631 |
PF09416
|
RNA helicase (UPF2 interacting domain) |
| 632 |
PF11056
|
Recombination, repair and ssDNA binding protein UvsY |
| 633 |
PF00559
|
Retroviral Vif (Viral infectivity) protein |
| 634 |
PF04555
|
Restriction endonuclease XhoI |
| 635 |
PF14184
|
Regulatory protein YrvL |
| 636 |
PF10426
|
Recombination-activating protein 1 zinc-finger domain |
| 637 |
PF12678
|
RING-H2 zinc finger |
| 638 |
PF08746
|
RING-like domain |
| 639 |
PF13639
|
Ring finger domain |
| 640 |
PF13445
|
RING-type zinc-finger, LisH dimerisation motif |
| 641 |
PF08080
|
RNPHF zinc finger |
| 642 |
PF13408
|
Recombinase zinc beta ribbon domain |
