3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03399

Details:

PFam ID : PF03399

PFam Domain Description : SAC3/GANP/Nin1/mts3/eIF-3 p25 family

Number of Sequence in 50% Dataset : 155

Number of Sequence in Full Dataset : 472

Average sequence length: 197.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03399	B6TT44_MAIZE_6_107	65.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03399	F1RNG7_PIG_624_758	90.6

Sequence based PCA Plot of the family - PF03399 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=102 Length=8
Motif3 Start=19 Length=8
Motif4 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay