3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07525

Details:

PFam ID : PF07525

PFam Domain Description : SOCS box

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 446

Average sequence length: 38.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07525	E5SIQ2_TRISP_621_668	28.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07525	F2UKF7_9EUKA_342_378	98.4

Sequence based PCA Plot of the family - PF07525 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay