3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00954

Details:

PFam ID : PF00954

PFam Domain Description : S-locus glycoprotein family

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 878

Average sequence length: 102.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00954	B9FPM3_ORYSJ_527_609	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00954	E0CTE9_VITVI_149_221	100

Sequence based PCA Plot of the family - PF00954 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=32 Length=8
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay