3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13466

Details:

PFam ID : PF13466

PFam Domain Description : STAS domain

Number of Sequence in 50% Dataset : 614

Number of Sequence in Full Dataset : 1430

Average sequence length: 79.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13466	E6V3B1_VARPD_405_482	56.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13466	A7IE06_XANP2_15_110	100

Sequence based PCA Plot of the family - PF13466 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=30 Length=8
Motif3 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay