3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00536

Details:

PFam ID : PF00536

PFam Domain Description : SAM domain (Sterile alpha motif)

Number of Sequence in 50% Dataset : 290

Number of Sequence in Full Dataset : 1257

Average sequence length: 61.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00536	B3RNE1_TRIAD_587_662	66.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00536	A8HMA6_CHLRE_2_56	99.9

Sequence based PCA Plot of the family - PF00536 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=27
Motif2 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay