3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00622

Details:

PFam ID : PF00622

PFam Domain Description : SPRY domain

Number of Sequence in 50% Dataset : 391

Number of Sequence in Full Dataset : 1864

Average sequence length: 119.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00622	D2VAM6_NAEGR_284_409	80.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00622	D3BET6_POLPA_132_179	99.6

Sequence based PCA Plot of the family - PF00622 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=114 Length=8
Motif4 Start=157 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay