3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01978

Details:

PFam ID : PF01978

PFam Domain Description : Sugar-specific transcriptional regulator TrmB

Number of Sequence in 50% Dataset : 249

Number of Sequence in Full Dataset : 724

Average sequence length: 67.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01978	A3CU55_METMJ_3_60	66.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01978	D7EC62_METEZ_11_94	100

Sequence based PCA Plot of the family - PF01978 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=38 Length=8
Motif2 Start=4 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay