3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03779

Details:

PFam ID : PF03779

PFam Domain Description : SPW repeat

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 179

Average sequence length: 50.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03779	Q1QFK2_NITHX_12_59	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03779	D5WW82_BACT2_3_52	100

Sequence based PCA Plot of the family - PF03779 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay